Survival-associated meQTLs across different cancer types


We identified 23,432 meQTLs associated with patient overall survival across different cancer types at FDR < 0.05.


e.g., "BLCA"
e.g., "rs11600543"


Cancer type
SNP ID
SNP position (hg19)
Alleles (A/a)
log-rank test p-value
Sample size
Median survival time AA
Median survival time Aa
Median survival time aa
Dispaly
CRC rs13238769 chr7:62058978 G/T 8.87E-7 364 23.37 20.27 11.27 KM Plot
CRC rs13239183 chr7:57842975 C/T 1.83E-5 366 23.33 20.58 11.92 KM Plot
CRC rs13239695 chr7:57845708 G/T 1.75E-5 368 23.33 20.38 11.92 KM Plot
CRC rs13240227 chr7:57837906 C/T 2.05E-5 361 23.33 20.58 11.27 KM Plot
CRC rs13240339 chr7:57838019 C/T 1.93E-5 367 23.33 20.3 11.92 KM Plot
CRC rs13241015 chr7:61998411 C/T 8.37E-7 365 22.67 20.3 11.27 KM Plot
CRC rs13243728 chr7:62041675 C/G 7.41E-7 367 23.83 20.23 11.27 KM Plot
CRC rs13244236 chr7:57842699 A/G 1.75E-5 368 23.33 20.38 11.92 KM Plot
CRC rs13244468 chr7:57842962 A/G 1.83E-5 366 23.33 20.58 11.92 KM Plot
CRC rs13245394 chr7:62131999 G/A 4.89E-7 368 24.2 20.08 11.27 KM Plot
CRC rs13246357 chr7:61987461 C/T 7.43E-7 364 22.53 20.3 11.27 KM Plot
CRC rs13247125 chr7:62042315 C/T 7.41E-7 367 23.83 20.23 11.27 KM Plot
CRC rs13247259 chr7:61072037 C/T 1.52E-6 374 24.47 20.08 10.27 KM Plot
CRC rs13247555 chr7:62084500 G/A 5.74E-6 369 24.33 20.23 14.37 KM Plot
CRC rs13296785 chr9:37258316 A/G 4.08E-9 374 5.1 26.6 21.53 KM Plot